Single Cell Sequencing Analysis

Single Cell Sequencing Analysis

R for Beginners PHD Mamas version

R for Beginners PHD Mamas version

Introduction to BEDTools

Introduction to BEDTools

Multifactor Designs in DESeq2

Multifactor Designs in DESeq2

DnA Lab Short Read Sequencing Workshop BIOTA18 7 21 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 21 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 22 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 22 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 20 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 20 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 26 2021 complete video only

DnA Lab Short Read Sequencing Workshop BIOTA18 7 26 2021 complete video only

DnA Lab Short Read Sequencing Workshop BIOTA18 7 19 2021

DnA Lab Short Read Sequencing Workshop BIOTA18 7 19 2021

Visualizing sequencing data

Visualizing sequencing data

Running Bowtie2

Running Bowtie2

Bowtie2 Overview

Bowtie2 Overview

Read mapping

Read mapping

Trimmomatic with Slurm

Trimmomatic with Slurm

Trimmomatic

Trimmomatic

Running FastQC

Running FastQC

Post sequencing quality evaluation

Post sequencing quality evaluation

Unix permissions

Unix permissions

Intro to the workshop

Intro to the workshop

file system paths

file system paths

vim tutorial

vim tutorial

stdout stderr GREP WC

stdout stderr GREP WC

Remote RSYNC, Reading Files

Remote RSYNC, Reading Files

Isoform differential expression analysis with Ballgown

Isoform differential expression analysis with Ballgown

Isoform analysis using Stringtie

Isoform analysis using Stringtie

Differential Expression Analysis with DESeq2

Differential Expression Analysis with DESeq2

Counting reads

Counting reads

Differential Expression Analysis

Differential Expression Analysis

Running HISAT

Running HISAT

mkdir cp mv rsync commmands

mkdir cp mv rsync commmands